Microbiology of the food chain — Polymerase chain reaction (PCR) for the detection and quantification of microorganisms — General requirements and definitions

This document specifies the general requirements for the in vitro amplification of nucleic acid sequences (DNA or RNA). This document is applicable to the testing for microorganisms and viruses from the food chain using the polymerase chain reaction (PCR). This document, or parts of it, is applicable to other fields of PCR diagnostics based on a case-by-case evaluation. The minimum requirements laid down in this document are intended to ensure that comparable and reproducible results are obtained in different laboratories. This document has been established for microorganisms from the food chain and is applicable to: — products intended for human consumption; — products for feeding animals; — environmental samples in the area of food and feed production and handling; — samples from the primary production stage.

Microbiologie de la chaîne alimentaire — Réaction de polymérisation en chaîne (PCR) pour la recherche et la quantification de micro-organismes — Exigences générales et définitions

General Information

Status
Published
Publication Date
15-Aug-2024
Technical Committee
Current Stage
6060 - International Standard published
Start Date
16-Aug-2024
Due Date
22-Dec-2023
Completion Date
16-Aug-2024
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ISO 22174:2024 - Microbiology of the food chain — Polymerase chain reaction (PCR) for the detection and quantification of microorganisms — General requirements and definitions Released:16. 08. 2024
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International
Standard
ISO 22174
Second edition
Microbiology of the food chain —
2024-08
Polymerase chain reaction (PCR)
for the detection and quantification
of microorganisms — General
requirements and definitions
Microbiologie de la chaîne alimentaire — Réaction de
polymérisation en chaîne (PCR) pour la recherche et la
quantification de micro-organismes — Exigences générales et
définitions
Reference number
© ISO 2024
All rights reserved. Unless otherwise specified, or required in the context of its implementation, no part of this publication may
be reproduced or utilized otherwise in any form or by any means, electronic or mechanical, including photocopying, or posting on
the internet or an intranet, without prior written permission. Permission can be requested from either ISO at the address below
or ISO’s member body in the country of the requester.
ISO copyright office
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Phone: +41 22 749 01 11
Email: copyright@iso.org
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Published in Switzerland
ii
Contents Page
Foreword .v
1 Scope . 1
2 Normative references . 1
3 Terms and definitions . 1
3.1 General terms .2
3.2 Terms related to the extraction and purification of DNA/RNA .3
3.3 Terms related to reverse transcription of RNA to DNA .4
3.4 Terms related to DNA amplification by PCR/RT-PCR .4
3.5 Terms related to controls .5
3.6 Terms related to qPCR .6
3.7 Terms related to dPCR .7
4 Principle . 8
4.1 General .8
4.2 Laboratory sample .9
4.3 Sampling, transport and storage.9
4.4 Preparation of test sample .9
5 Microbial enrichment and virus concentration . 9
5.1 Microbial enrichment .9
5.2 Virus concentration .9
6 Nucleic acid preparation . 10
6.1 General .10
6.2 Prevention of amplification of DNA from dead cells .10
6.3 Nucleic acid extraction, release and purification .10
6.4 Nucleic acid quality and quantity .10
7 PCR amplification . .11
8 Detection and confirmation of amplicons .11
9 General environmental laboratory requirements .12
9.1 General . 12
9.2 Laboratory setup . 12
9.2.1 General . 12
9.2.2 Control of flows . 13
9.2.3 Cleaning of laboratory .14
9.2.4 Environmental monitoring for nucleic acid contamination .14
10 Reagents and consumables . 14
11 Equipment . 14
12 Procedure .15
12.1 Enrichment and sample treatment . 15
12.2 Amplification .16
12.2.1 General .16
12.2.2 Control reaction .16
12.2.3 Detection of amplicon .18
12.2.4 Data analysis .18
12.3 Evaluation .19
12.3.1 Qualitative evaluation .19
12.3.2 Quantitative evaluation . 20
12.4 Test report .21
13 Performance characteristics of PCR-based methods .21
14 Validation and verification of PCR-based methods.21
14.1 General .21

iii
14.2 Validation .21
14.3 Verification . . 22
Annex A (informative) Fluorescence signals and amplification curve .23
Bibliography .26

iv
Foreword
ISO (the International Organization for Standardization) is a worldwide federation of national standards
bodies (ISO member bodies). The work of preparing International Standards is normally carried out through
ISO technical committees. Each member body interested in a subject for which a technical committee
has been established has the right to be represented on that committee. International organizations,
governmental and non-governmental, in liaison with ISO, also take part in the work. ISO collaborates closely
with the International Electrotechnical Commission (IEC) on all matters of electrotechnical standardization.
The procedures used to develop this document and those intended for its further maintenance are described
in the ISO/IEC Directives, Part 1. In particular, the different approval criteria needed for the different types
of ISO document should be noted. This document was drafted in accordance with the editorial rules of the
ISO/IEC Directives, Part 2 (see www.iso.org/directives).
ISO draws attention to the possibility that the implementation of this document may involve the use of (a)
patent(s). ISO takes no position concerning the evidence, validity or applicability of any claimed patent
rights in respect thereof. As of the date of publication of this document, ISO had not received notice of (a)
patent(s) which may be required to implement this document. However, implementers are cautioned that
this may not represent the latest information, which may be obtained from the patent database available at
www.iso.org/patents. ISO shall not be held responsible for identifying any or all such patent rights.
Any trade name used in this document is information given for the convenience of users and does not
constitute an endorsement.
For an explanation of the voluntary nature of standards, the meaning of ISO specific terms and expressions
related to conformity assessment, as well as information about ISO’s adherence to the World Trade
Organization (WTO) principles in the Technical Barriers to Trade (TBT), see www.iso.org/iso/foreword.html.
This document was prepared by Technical Committee TC 34, Food products, Subcommittee SC 9, Microbiology,
in collaboration with the European Committee for Standardization (CEN) Technical Committee CEN/TC 463,
Microbiology of the food chain, in accordance with the Agreement on technical cooperation between ISO and
CEN (Vienna Agreement).
This second edition cancels and replaces ISO 22174:2005, ISO 20837:2006, ISO 20838:2006 and
ISO 22119:2011, which have been technically revised.
The main changes are as follows:
— inclusion of requirements for the implementation of digital PCR;
— inclusion of requir
...

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