SIST EN 17805:2023
(Main)Water quality - Sampling, capture and preservation of environmental DNA from water
Water quality - Sampling, capture and preservation of environmental DNA from water
This document specifies procedures for sampling, capture and preservation of environmental DNA (eDNA) in aquatic environments, stemming from organisms that are or have recently been present in a waterbody, have visited it or whose DNA has been introduced to the waterbody through some mechanism. This document also covers procedures for avoiding sample contamination and ensuring DNA quality, key properties of the filtering procedure and equipment and reporting standards.
This document does not include the collection of eDNA from biofilms, sediments or similar sample types and does not cover sampling designs.
Wasserbeschaffenheit - Probenahme, Erfassung und Konservierung von Umwelt‑DNA in Wasser
Dieses Dokument legt Verfahren für die Probenahme, die Erfassung und die Konservierung von Umwelt DNA (eDNA) in Gewässern fest, die von Organismen stammen, die sich in einem Gewässer aufhalten oder aufgehalten haben, das Gewässer besucht haben oder deren DNA durch irgendeinen Mechanismus in das Gewässer gelangt ist. Dieses Dokument behandelt auch Verfahren zur Vermeidung von Proben¬kontaminationen und zur Sicherstellung der DNA Qualität, Schlüsseleigenschaften des Filtrationsverfahrens und der Ausrüstung sowie Berichtsstandards.
Dieses Dokument befasst sich nicht mit der Gewinnung von eDNA aus Biofilmen, Sedimenten oder ähnlichen Probenarten und geht nicht auf die Planung der Probenahme ein.
Qualité de l'eau - Échantillonnage, collecte et conservation de l'ADN environnemental prélevé dans l'eau
Le présent document spécifie des modes opératoires d'échantillonnage, de capture et de conservation de l’ADN environnemental (ADNe) dans des milieux aquatiques, provenant d’organismes qui sont ou qui ont été récemment présents dans une masse d’eau, qui l’ont parcouru ou dont l’ADN a été introduit dans la masse d’eau par un mécanisme précis. Le présent document porte également sur les modes opératoires permettant d'éviter la contamination des échantillons et de contrôler la qualité de l’ADN, les principales propriétés du mode opératoire et de l'équipement de filtration et les normes relatives au compte rendu
Le présent document n’inclut pas la collecte d’ADNe de biofilms, sédiments ou autres types d'échantillons similaires et n’aborde pas la question des plans d'échantillonnage.
Kakovost vode - Vzorčenje, zbiranje in konzerviranje okoljske DNK iz vode
Vzorčenje vode za zajem okoljske DNK (eDNA) v vodnih okoljih. Okoljski DNK izvira iz organizmov, ki živijo ali so pred kratkim živeli v vodnem telesu, in ne vključuje okoljskega DNK, ki se nahaja v usedlinah ali podobnih vrstah vzorcev. Standard zajema postopke za preprečevanje kontaminacije vzorcev in zagotavljanje kakovosti DNK, ključne lastnosti postopka filtriranja in opreme ter standarde za poročanje.
General Information
Relations
Standards Content (Sample)
SLOVENSKI STANDARD
01-junij-2023
Kakovost vode - Vzorčenje, zbiranje in konzerviranje okoljske DNK iz vode
Water quality - Sampling, capture and preservation of environmental DNA from water
Wasserbeschaffenheit - Probenahme, Erfassung und Konservierung von Umwelt‑DNA
in Wasser
Qualité de l'eau - Échantillonnage, collecte et conservation de l'ADN environnemental
prélevé dans l'eau
Ta slovenski standard je istoveten z: EN 17805:2023
ICS:
13.060.45 Preiskava vode na splošno Examination of water in
general
13.060.70 Preiskava bioloških lastnosti Examination of biological
vode properties of water
2003-01.Slovenski inštitut za standardizacijo. Razmnoževanje celote ali delov tega standarda ni dovoljeno.
EN 17805
EUROPEAN STANDARD
NORME EUROPÉENNE
March 2023
EUROPÄISCHE NORM
ICS 13.060.70
English Version
Water quality - Sampling, capture and preservation of
environmental DNA from water
Qualité de l'eau - Échantillonnage, collecte et Wasserbeschaffenheit - Probenahme, Erfassung und
conservation de l'ADN environnemental prélevé dans Konservierung von Umwelt-DNA in Wasser
l'eau
This European Standard was approved by CEN on 30 January 2023.
CEN members are bound to comply with the CEN/CENELEC Internal Regulations which stipulate the conditions for giving this
European Standard the status of a national standard without any alteration. Up-to-date lists and bibliographical references
concerning such national standards may be obtained on application to the CEN-CENELEC Management Centre or to any CEN
member.
This European Standard exists in three official versions (English, French, German). A version in any other language made by
translation under the responsibility of a CEN member into its own language and notified to the CEN-CENELEC Management
Centre has the same status as the official versions.
CEN members are the national standards bodies of Austria, Belgium, Bulgaria, Croatia, Cyprus, Czech Republic, Denmark, Estonia,
Finland, France, Germany, Greece, Hungary, Iceland, Ireland, Italy, Latvia, Lithuania, Luxembourg, Malta, Netherlands, Norway,
Poland, Portugal, Republic of North Macedonia, Romania, Serbia, Slovakia, Slovenia, Spain, Sweden, Switzerland, Türkiye and
United Kingdom.
EUROPEAN COMMITTEE FOR STANDARDIZATION
COMITÉ EUROPÉEN DE NORMALISATION
EUROPÄISCHES KOMITEE FÜR NORMUNG
CEN-CENELEC Management Centre: Rue de la Science 23, B-1040 Brussels
© 2023 CEN All rights of exploitation in any form and by any means reserved Ref. No. EN 17805:2023 E
worldwide for CEN national Members.
Contents Page
European foreword . 3
Introduction . 4
1 Scope . 5
2 Normative references . 5
3 Terms and definitions . 5
4 Principle . 7
5 Procedure. 8
5.1 General . 8
5.2 Considerations prior to fieldwork . 8
5.3 Equipment preparation prior to fieldwork . 8
5.4 Sampling the eDNA from water . 8
5.5 Preserving the sample . 9
6 Equipment . 10
7 Preservative solutions. 11
7.1 General . 11
7.2 Examples of preservative solutions . 11
8 Sampling report . 12
8.1 General . 12
8.2 Sample identity and characteristics . 12
8.3 Sampling site . 12
8.4 Sampling conditions . 12
8.5 Sampling . 13
9 Avoiding sample contamination . 13
9.1 General . 13
9.2 Contamination that originates from equipment . 13
9.3 Sampling equipment decontamination procedure . 14
Annex A (informative) Filter types . 15
Bibliography . 16
European foreword
This document (EN 17805:2023) has been prepared by Technical Committee CEN/TC 230 “Water
analysis”, the secretariat of which is held by DIN.
This European Standard shall be given the status of a national standard, either by publication of an
identical text or by endorsement, at the latest by September 2023, and conflicting national standards
shall be withdrawn at the latest by September 2023.
Attention is drawn to the possibility that some of the elements of this document may be the subject of
patent rights. CEN shall not be held responsible for identifying any or all such patent rights.
Any feedback and questions on this document should be directed to the users’ national standards body.
A complete listing of these bodies can be found on the CEN website.
According to the CEN-CENELEC Internal Regulations, the national standards organisations of the
following countries are bound to implement this European Standard: Austria, Belgium, Bulgaria,
Croatia, Cyprus, Czech Republic, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Iceland,
Ireland, Italy, Latvia, Lithuania, Luxembourg, Malta, Netherlands, Norway, Poland, Portugal, Republic of
North Macedonia, Romania, Serbia, Slovakia, Slovenia, Spain, Sweden, Switzerland, Türkiye and the
United Kingdom.
Introduction
WARNING — Persons using this document should be familiar with water sampling protocols to
assess biological diversity. This document does not purport to address all of the safety problems,
if any, associated with its use. It is the responsibility of the user to establish appropriate health
and safety practices.
Moreover, the need of notification, obtaining certificates or permits prior to sampling,
depending on national or international laws and regulations such as the Nagoya Protocol on
Access to Genetic Resources (https://www.cbd.int/abs/), needs to be considered.
The monitoring of organisms is key to the assessment of the status of aquatic ecosystems and is
required by national and international legislation such as the European Union Water Framework
Directive (2000/60/EC). A range of methods have been described how to monitor organisms in aquatic
environments, leading to a wide range of European standards (e.g. EN 14011:2003, EN 14757:2015,
EN 15460:2007). These approaches, however, necessitate the capture and/or collection of the
organisms of interest, which can be a laborious and time-consuming process.
The possibility to detect the presence of organisms and/or quantify relative abundance (e.g. [6]) in
aquatic environments via the analysis of environmental DNA (eDNA) provides a novel means to
monitor biodiversity across a wide range of taxonomic groups, including microorganisms, plants and
animals ([7][8][9]). This approach allows to examine organismic diversity without the need to directly
isolate and capture organisms and it is expected to play a key role for future biomonitoring aiming at
temporally and spatially highly resolved species inventories [10]. Albeit the power of the eDNA
approach has been repeatedly reported [11], there is a great need for standardizing the application of
eDNA-based assessment of aquatic biodiversity ([12], [13]). Note, however, that eDNA-based
biomonitoring currently does not allow to obtain certain population parameters (e.g. individual size,
sex) which can be obtained by traditional sampling techniques.
This document provides guidance how to sample and preserve eDNA from water samples, addressing
the first and crucial step for any further downstream eDNA-based analyses of biodiversity. A specific
technical report for the routine sampling of benthic diatoms from rivers and lakes adapted for
metabarcoding analyses is CEN/TR 17245:2018.
1 Scope
This document specifies procedures for sampling, capture and preservation of environmental DNA
(eDNA) in aquatic environments, stemming from organisms that are or have recently been present in a
waterbody, have visited it or whose DNA has been introduced to the waterbody through some
mechanism. This document also covers procedures for avoiding sample contamination and ensuring
DNA quality, key properties of the filtering procedure and equipment and reporting standards.
This document does not include the collection of eDNA from biofilms, sediments or similar sample types
and does not cover sampling designs.
2 Normative references
There are no normative references in this document.
3 Terms and definitions
For the purposes of this document, the following terms and definitions apply.
ISO and IEC maintain terminology databases for use in standardization at the following addresses:
— IEC Electropedia: available at https://www.electropedia.org/
— ISO Online browsing platform: available at https://www.iso.org/obp
3.1
cross-contamination
unintended transfer of any source of and/or DNA from one sample to another sample
3.2
decontamination
procedure to remove any source and/or trace of DNA from material that might come into contact with
the sample
3.3
enclosed filter
filtering device where the filter membrane is encapsulated and where the inflow and outflow can be
closed for transport and storage
Note 1 to entry: The eDNA contained on the filter is typically extracted without removing the membrane from the
filter capsule greatly reducing the risk of contamination of samples. See Figure A.1 C. in Annex A.
3.4
environmental DNA
eDNA
material stemming e.g. from dead or from living organisms and include single-stranded (ss) and double-
stranded (ds) DNA fragments from nuclear and mitochondrial/plastid DNA of eukaryotes as well as
plasmid DNA of prokaryotes
Note 1 to entry: Subsuming DNA from various sources such as unicellular or small multicellular organisms or
tissue particles (e.g. shed cells, faeces) and gametes of multicellular organisms.
3.5
field equipment blank
sample obtained from processing target DNA-free water (e.g. distilled water) through all the equipment
used and covering all procedures involved in the eDNA sampling process to allow checking that the
equipment and procedures do not introduce DNA contamination
3.6
housed filter
systems in which a filter membrane is protected within a solid housing during the filtration process
Note 1 to entry: The filters are removed from the housing for eDNA extraction. The housing can be opened and
the filter removed for preservation and later processing. See Figure A.1 B. in Annex A.
3.7
lysis buffer
buffer solution to preserve DNA present in the sample and to lyse/open cells as a first step of the DNA
extraction
3.8
internal positive control
IPC
known fragment of synthetic or natural DNA containing an amplifiable and quantifiable sequence that
will not naturally occur in the sample
Note 1 to entry: The IPC can be added to the sample or the preservation/lysis buffer at a known concentration to
verify the efficiency of DNA preservation, DNA extraction, DNA amplification and DNA identification.
3.9
open filter
filtering device including filtration towers (laboratory) and filtration backpacks from which the filter
membrane has to be removed by hand f
...
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